Projects

Created 2016-12-03. Updated 2021-01-12.

Institute for Systems Biology, 2018—.

Publications

Storer, J., Hubley, R., Rosen, J., et al. (2021). The Dfam community resource of transposable element families, sequence Models, and genome annotations. Mobile DNA, 12, 2. https://doi.org/10.1186/s13100-020-00230-y

Flynn, J. M., Hubley, R., Goubert, C., Rosen, J., Clark, A. G., Feschotte, C., Smit, A. F. (2020). RepeatModeler2 for automated genomic discovery of transposable element families. Proceedings of the National Academy of Sciences, 117(17), 9451-9457. https://doi.org/10.1073/pnas.1921046117

University of Montana, 2016—2018.

Publications

Rosen, J., Handy, K., Gillan, A. et al. (2017). JS-MS: a cross-platform, modular javascript viewer for mass spectrometry signals. BMC Bioinformatics 18, 469. https://doi.org/10.1186/s12859-017-1883-6

Handy, K., Rosen, J., Gillan, A., Smith, R. (2017). Fast, axis-agnostic, dynamically summarized storage and retrieval for mass spectrometry data. PLOS ONE. https://doi.org/10.1371/journal.pone.0188059

Personal

Miscellaneous personal projects can be found on my Gitea instance. Projects I contribute to can be found on my GitHub profile.