Created 2016-12-03. Updated 2021-01-12.

Institute for Systems Biology, 2018—.


Storer, J., Hubley, R., Rosen, J., et al. (2021). The Dfam community resource of transposable element families, sequence Models, and genome annotations. Mobile DNA, 12, 2.

Flynn, J. M., Hubley, R., Goubert, C., Rosen, J., Clark, A. G., Feschotte, C., Smit, A. F. (2020). RepeatModeler2 for automated genomic discovery of transposable element families. Proceedings of the National Academy of Sciences, 117(17), 9451-9457.

University of Montana, 2016—2018.


Rosen, J., Handy, K., Gillan, A. et al. (2017). JS-MS: a cross-platform, modular javascript viewer for mass spectrometry signals. BMC Bioinformatics 18, 469.

Handy, K., Rosen, J., Gillan, A., Smith, R. (2017). Fast, axis-agnostic, dynamically summarized storage and retrieval for mass spectrometry data. PLOS ONE.


Miscellaneous personal projects can be found on my Gitea instance. Projects I contribute to can be found on my GitHub profile.