I previously worked in Arian Smit's group within the
Hood-Price Lab.
We researched methods of discovery and identification of both known and
unknown repetitive features in genomic DNA, especially
Transposable Elements (TEs),
and published and maintained several specialized programs and databases
for TE research including
Dfam,
RepeatMasker, and
RepeatModeler.
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Storer, J. M., Hubley, R., Rosen, J., and Smit, A. F. A. (2022).
“Methodologies for the De novo Discovery of Transposable Element Families”
Genes, 13(4), 709. https://doi.org/10.3390/genes13040709
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Storer, J. M., Hubley, R., Rosen, J., and Smit, A. F. A. (2021).
“Curation Guidelines for de novo generated transposable element families.”
Current Protocols, 1, e154. https://doi.org/10.1002/cpz1.154
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Storer, J., Hubley, R., Rosen, J., et al. (2021).
“The Dfam community resource of transposable element families, sequence models, and genome annotations.”
Mobile DNA, 12, 2. https://doi.org/10.1186/s13100-020-00230-y
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Flynn, J. M., Hubley, R., et al. (2020).
“RepeatModeler2 for automated genomic discovery of transposable element families.”
Proceedings of the National Academy of Sciences, 117(17), 9451-9457.
https://doi.org/10.1073/pnas.1921046117
- All publications: https://orcid.org/0000-0002-8832-1276
